Jump to content

Small nucleolar RNA SNORA77: Difference between revisions

Add links
From Wikipedia, the free encyclopedia
Browse history interactively
← Previous edit
Content deleted Content added
VisualWikitext
m [Pu405]Tweak: title. You can use this bot yourself. Report bugs here.
→top: ce lead, bio context
 
(12 intermediate revisions by 9 users not shown)
Line 1: Line 1:
{{Infobox rfam
| Name = Small nucleolar RNA SNORA77
| image = RF00599.jpg
| width =
| caption = Predicted [[secondary structure]] and [[sequence conservation]] of SNORA77
| Symbol = SNORA77
| AltSymbols =
| Rfam = RF00599
| miRBase =
| miRBase_family =
| RNA_type = [[Gene]]; [[Small nuclear RNA|snRNA]]; [[Small nucleolar RNA|snoRNA]]; H/ACA-box
| Tax_domain = [[Eukaryota]]
| GO = {{GO|0006396}} {{GO|0005730}}
| SO = {{SO|0000594}}
| CAS_number =
| EntrezGene =
| HGNCid =
| OMIM =
| PDB =
| RefSeq =
| Chromosome =
| Arm =
| Band =
| LocusSupplementaryData =
}}


⚫
In [[molecular biology]], '''Small nucleolar RNA SNORA77''' (also known as ACA63) is a [[non-coding RNA]] (ncRNA) molecule which functions in the biogenesis (modification) of other [[small nuclear RNA]]s (snRNAs). This type of modifying RNA is located in the nucleolus of the [[eukaryotic]] cell which is a major site of snRNA biogenesis. It is known as a [[snoRNA|small nucleolar RNA]] (snoRNA).
{{Rfam_box|acc=RF00599| description=Small nucleolar RNA SNORA77 |abbreviation=SNORA77 |avg_length=123.20 |avg_identity=68.00 |type=Gene; snRNA; snoRNA; HACA-box; |se={{PMID|16373490}}; INFERNAL |ss=Predicted; RNAalifold |release=10.0}}


⚫
SNORA77 was identified by computational screening and its expression in mouse experimentally verified by [[Northern blot]] and primer extension analysis.<ref name="pmid16373490">{{cite journal | vauthors = Schattner P, Barberan-Soler S, Lowe TM | title = A computational screen for mammalian pseudouridylation guide H/ACA RNAs | journal = RNA | volume = 12 | issue = 1 | pages = 15–25 | date = January 2006 | pmid = 16373490 | pmc = 1370881 | doi = 10.1261/rna.2210406 }}</ref>
⚫
'''Small nucleolar RNA SNORA77''' (also known as ACA63) is a [[non-coding RNA]] (ncRNA) molecule which functions in the biogenesis (modification) of other [[small nuclear RNA]]s (snRNAs). This type of modifiying RNA is located in the nucleolus of the [[eukaryotic]] cell which is a major site of snRNA biogenesis. It is known as a [[snoRNA|small nucleolar RNA]] (snoRNA).
It belongs to the [[SnoRNA#H/ACA box|H/ACA box]] class of snoRNAs as it has the predicted hairpin-hinge-hairpin-tail structure and conserved H/ACA-box motifs.<ref name="pmid15199136">{{cite journal | vauthors = Kiss AM, Jády BE, Bertrand E, Kiss T | title = Human box H/ACA pseudouridylation guide RNA machinery | journal = Molecular and Cellular Biology | volume = 24 | issue = 13 | pages = 5797–5807 | date = July 2004 | pmid = 15199136 | pmc = 480876 | doi = 10.1128/MCB.24.13.5797-5807.2004 }}</ref>


⚫
SNORA77 is proposed to guide the pseudouridylation of 18S [[ribosomal RNA]] (rRNA) residue U814.<ref name="pmid16381836">{{cite journal | vauthors = Lestrade L, Weber MJ | title = snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs | journal = Nucleic Acids Research | volume = 34 | issue = Database issue | pages = D158–162 | date = January 2006 | pmid = 16381836 | pmc = 1347365 | doi = 10.1093/nar/gkj002 | citeseerx = 10.1.1.105.7552 }}</ref>
⚫
SNORA77 was identified by computational screening and its expression in mouse experimentally verified by [[Northern blot]] and primer extension analysis<ref name="pmid16373490">{{cite journal | author = Schattner P, Barberan-Soler S, Lowe TM | title = A computational screen for mammalian pseudouridylation guide H/ACA RNAs | journal = RNA | volume = 12 | issue = 1 | pages = 15–25 | year = 2006 | pmid = 16373490 | doi = 10.1261/rna.2210406| pmc = 1370881 }}</ref>. It belongs to the [[SnoRNA#H.2FACA box|H/ACA box]] class of snoRNAs as it has the predicted hairpin-hinge-hairpin-tail structure and conserved H/ACA-box motifs <ref name="pmid15199136">{{cite journal | author = Kiss AM, Jady BE, Bertrand E, Kiss T | title = Human Box H/ACA Pseudouridylation Guide RNA Machinery | journal = Mol. Cell. Biol. | volume = 24 | issue = 13 | pages = 5797–807 | year = 2004 | pmid = 15199136 | doi = 10.1128/MCB.24.13.5797-5807.2004| pmc = 480876 }}</ref>.
Pseudouridylation is the [[isomerisation]] of the nucleoside [[uridine]] to the different isomeric form [[pseudouridine]].


⚫
== References ==
⚫
SNORA77 is proposed to guide the pseudouridylation of 18S [[ribosomal RNA]] (rRNA) residue U814<ref name="pmid16381836">{{cite journal | author = Lestrade L, Weber MJ | title = snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs | journal = Nucleic Acids Res. | volume = 34 | issue = Database issue | pages = D158–62 | year = 2006 | pmid = 16381836 | doi = 10.1093/nar/gkj002| pmc = 1347365 }}</ref>. Pseudouridylation is the ([[isomerisation]] of the nucleoside [[uridine]]) to the different isomeric form [[pseudouridine]].
{{Reflist}}


⚫
== External links ==
⚫
==References==
{{reflist|1}}

⚫
==External links==
* {{Rfam|id=RF00599|name=Small nucleolar RNA SNORA77}}
* {{Rfam|id=RF00599|name=Small nucleolar RNA SNORA77}}
* [http://www-snorna.biotoul.fr/plus.php?id=ACA63 snoRNAbase entry for SNORA77]
* {{snoRNABase|id=ACA63|name=SNORA77}}
⚫
{{molecular-cell-biology-stub}}


⚫
[[Category:Non-coding_RNA]]
{{Small nucleolar RNA SNORA}}
{{Small nucleolar RNA SNORA}}

⚫
[[Category:Non-coding RNA]]

⚫
{{molecular-cell-biology-stub}}

Latest revision as of 19:23, 27 October 2021

Small nucleolar RNA SNORA77
Predicted secondary structure and sequence conservation of SNORA77
Identifiers
SymbolSNORA77
RfamRF00599
Other data
RNA typeGene; snRNA; snoRNA; H/ACA-box
Domain(s)Eukaryota
GOGO:0006396 GO:0005730
SOSO:0000594
PDB structuresPDBe

In molecular biology, Small nucleolar RNA SNORA77 (also known as ACA63) is a non-coding RNA (ncRNA) molecule which functions in the biogenesis (modification) of other small nuclear RNAs (snRNAs). This type of modifying RNA is located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a small nucleolar RNA (snoRNA).

SNORA77 was identified by computational screening and its expression in mouse experimentally verified by Northern blot and primer extension analysis.[1] It belongs to the H/ACA box class of snoRNAs as it has the predicted hairpin-hinge-hairpin-tail structure and conserved H/ACA-box motifs.[2]

SNORA77 is proposed to guide the pseudouridylation of 18S ribosomal RNA (rRNA) residue U814.[3] Pseudouridylation is the isomerisation of the nucleoside uridine to the different isomeric form pseudouridine.

References

[edit]
  1. ^ Schattner P, Barberan-Soler S, Lowe TM (January 2006). "A computational screen for mammalian pseudouridylation guide H/ACA RNAs". RNA. 12 (1): 15–25. doi:10.1261/rna.2210406. PMC 1370881. PMID 16373490.
  2. ^ Kiss AM, Jády BE, Bertrand E, Kiss T (July 2004). "Human box H/ACA pseudouridylation guide RNA machinery". Molecular and Cellular Biology. 24 (13): 5797–5807. doi:10.1128/MCB.24.13.5797-5807.2004. PMC 480876. PMID 15199136.
  3. ^ Lestrade L, Weber MJ (January 2006). "snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs". Nucleic Acids Research. 34 (Database issue): D158–162. CiteSeerX 10.1.1.105.7552. doi:10.1093/nar/gkj002. PMC 1347365. PMID 16381836.
[edit]


Stub icon

This molecular or cell biology article is a stub. You can help Wikipedia by expanding it.

Retrieved from "https://en.wikipedia.org/w/index.php?title=Small_nucleolar_RNA_SNORA77&oldid=1052168216"